Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKCIVGLGNIGKRFELTRHNIGFEVVDYILEKNNFSL-DKQKFKGAYTIERMNGDKVLFIEPMTMMNLSGEAVAPIMDYYNVNPEDLIVLYDDLDLEQGQVRLRQKGSAGGHNGMKSIIKMLGT-DQFKRIRIGVGRPTNGMTVPDYVLQRFSNDEMVTMEKVIEHAARAIEKFVETSRFDHVMNEFNGEVK
4QD3 Chain:A ((4-170))
VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFA-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4QD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103182 for 1357 contacts (-76.0/contact) +
2D Compatibility (PS) -17206 + (NN) -1129 + (LL) 2076
1D Compatibility (HY) -8800 + (ID) 2900
Total energy: -131141.0 ( -96.64 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_4QD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QD3-query.scw
PDB file :
Tito_Scwrl_4QD3.pdb
: