Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEWSQIFHDITTKHDFKAMHDFLEKEYSTAIVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTPH--LQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANAYLESVGKSPINWCESEA
2OXM Chain:A ((21-222))
---------------FIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKE---
General information:
TITO was launched using:
RESULT:
Template:
2OXM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103535 for 1611 contacts (-64.3/contact) +
2D Compatibility (PS) -21354 + (NN) -10785 + (LL) 1424
1D Compatibility (HY) -17600 + (ID) 4900
Total energy: -156750.0 ( -97.30 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_2OXM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OXM-query.scw
PDB file :
Tito_Scwrl_2OXM.pdb
: