Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
3TT7 Chain:E ((4-190))
---IPTVI--------AYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL-----
General information:
TITO was launched using:
RESULT:
Template:
3TT7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129121 for 1366 contacts (-94.5/contact) +
2D Compatibility (PS) -19238 + (NN) -5654 + (LL) 836
1D Compatibility (HY) -23200 + (ID) 7200
Total energy: -183577.0 ( -134.39 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_3TT7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TT7-query.scw
PDB file :
Tito_Scwrl_3TT7.pdb
: