Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSI--------DKLDDMIESL-YDKQVFVLADSDDEGDRIRNWFKRYLSE--SEHIFIDKT---YCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
1VDD Chain:A ((80-199))
----RTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVSKP------------------
General information:
TITO was launched using:
RESULT:
Template:
1VDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29785 for 644 contacts (-46.2/contact) +
2D Compatibility (PS) -11657 + (NN) -1663 + (LL) 1904
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -44401.0 ( -68.95 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_1VDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VDD-query.scw
PDB file :
Tito_Scwrl_1VDD.pdb
: