Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLVLLGGGYGNMRIMSRILTTSLPQDYTVTLVDRMPFHGLKP-EFYALAAGTKSDK-DVR----MKFPNHPQVNT-VYGEINDIDLDAQIVSVG------NSKIDYDELIIGLGCEDKYHNVPGAEE-YTHSIQTLSKARDTFHSISELPEGAKVGIVGAGLSGIELASELRESRSDLEIYLYDRGPRILRNFPEKLSKYVAKWFAKNNVTVVPNSNINKVEPG-----------------------KIYNC-DEPKDIDLVVWTAGIQPVE-VVRNLPIDINSNGRVIVNQYHQVPTYRNVYVVGDCADLPH--------APSAQLAEVQGDQIADVLKKQWLNEPLPDKMPELKVQGIVGSLGDKQGFAYIMDRTVTGRLASILKSGVLWLYKYHNG |
| 3NTD Chain:A ((1-338)) | MKKILIIGGVAGGASAAARARRL-S-ETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQM-NNVEHATVVGGGFIGLEMMESLHHL--GIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQ-TSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGR--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177183 for 2412 contacts (-73.5/contact) +
2D Compatibility (PS) -32224 + (NN) -21016 + (LL) 3504
1D Compatibility (HY) -11200 + (ID) 2900
Total energy: -241019.0 ( -99.92 by residue)
QMean score : 0.555
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