Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MYNKDDVLKQADNIANK-IKNLDTIKTYQQIEAQIHQNQTIKTKMDMLKKHQKQAVNFQNYGKQNALEQSEHTIQSIEAEINTLPIVEQFQTSQYEANQLLKMFVSTMETRLNDHNKAKHSD-
2PIH Chain:A ((2-124))
TLYSKKDIVQQARNLA-KMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGD
General information:
TITO was launched using:
RESULT:
Template:
2PIH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 42425 for 648 contacts (65.5/contact) +
2D Compatibility (PS) -13038 + (NN) -4133 + (LL) -80
1D Compatibility (HY) 6400 + (ID) 600
Total energy: 30974.0 ( 47.80 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_2PIH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PIH-query.scw
PDB file :
Tito_Scwrl_2PIH.pdb
: