Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNEIETIISEIEKLLTNNTPY---SISKNSGVPRQTVTDLKVGKTKIKEAKFKTIIKLYEYQRTLENKTEC---------------------
2KPJ Chain:A ((1-94))
MVKDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKLNIDTVPIESGYTLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2KPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6522 for 424 contacts (15.4/contact) +
2D Compatibility (PS) -7218 + (NN) -2000 + (LL) 0
1D Compatibility (HY) -800 + (ID) 550
Total energy: -4046.0 ( -9.54 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_2KPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KPJ-query.scw
PDB file :
Tito_Scwrl_2KPJ.pdb
: