Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--M-KNYSFYQFV-MT---VRGRHDDKGR-LAEEIFDDLA-------------FPKHDDDFNILSDYIETHGDFTLPMSVFDDLYEEYTEWLKF------------
3KTB Chain:A ((1-106))
SNAMKKIEIFDPAMCCPTGLCGTNINPELMRIAVVIESLKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQKHGADALPITLVDGEIAVSQTYPTTKQMSEWTGVNLD
General information:
TITO was launched using:
RESULT:
Template:
3KTB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26585 for 381 contacts (-69.8/contact) +
2D Compatibility (PS) -7424 + (NN) 812 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -35697.0 ( -93.69 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_3KTB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KTB-query.scw
PDB file :
Tito_Scwrl_3KTB.pdb
: