Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE
3Q8U Chain:E ((1-149))
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE
General information:
TITO was launched using:
RESULT:
Template:
3Q8U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77316 for 1144 contacts (-67.6/contact) +
2D Compatibility (PS) -16100 + (NN) -6004 + (LL) 0
1D Compatibility (HY) -20400 + (ID) 7450
Total energy: -127270.0 ( -111.25 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3Q8U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q8U-query.scw
PDB file :
Tito_Scwrl_3Q8U.pdb
: