Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNAIELSNVNYSS-D-QFNLKNISFKVPQGFVTGFIGRNGAGKTTIIRLIMDLYQPQTGVIRVLEEDMAL---NPIELKNSIGFVYSENY-FNERWTTKQLEKMIAPFYR---KWDHQVFEFYLEKFDLP--INKSIKTFSTGMKMKLSLAVAFSHHAELYIFDEPTSGLDPLARNELLEIIQQELIDENKTIFMSTHIISDLEKIADYIIHLSDGEVILNGSKEQLLQRYQVVSGATEDLDDELASLLIYEEHKRTGFIGLTEHAQVFKEILGHKVNITTPSIENLMVYLEKRKPKYHENIKLMEEGF |
| 3GFO Chain:A ((5-236)) | DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE----------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126404 for 1769 contacts (-71.5/contact) +
2D Compatibility (PS) -23939 + (NN) -10075 + (LL) 5944
1D Compatibility (HY) -12400 + (ID) 2600
Total energy: -169474.0 ( -95.80 by residue)
QMean score : 0.546
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