Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDSNQGLQANPQYTIHYLSQEITRLTQENAMLKAYIQEQNEKSKSAEEE
2K8F Chain:B ((1-39))
MEEPQSDPSVEPPLS-----------QETFSDLWKLLPENNVLSPLPSQA
General information:
TITO was launched using:
RESULT:
Template:
2K8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4231 for 130 contacts (32.5/contact) +
2D Compatibility (PS) -4106 + (NN) -3620 + (LL) 1244
1D Compatibility (HY) -1200 + (ID) 300
Total energy: -3751.0 ( -28.85 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_2K8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K8F-query.scw
PDB file :
Tito_Scwrl_2K8F.pdb
: