Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLLLPLIIMLLVLAACGNQGEKNNKAETKSYKMDDG-KTVDIPKDPKRIAVVAPTYAGGLKKLGA--NIVAVNQQVDQSKVLK----DKFKGVTKIGDGDVEKVAKEKPDLIIVYST-DKDIKKYQKVAPTVVVDY---NK-HKYLEQQEMLGKIVGKEDKVKAWKKDWEETTAKDGKEIKKAIGQDATVSLFDEFDKKLYTYGDNWGRGGEVLYQAFGLKMQPEQQKLTAKAGWAEVKQEEIEKYAGDYIVSTSEGK------PTPGYESTNMWKNLKATKEGHIVKVDAGTYW--YNDPYTLDFMRKDLKEKLIKAAK |
| 3GFV Chain:A ((14-299)) | ---------------------------KEQITVKHQLDKNGTKVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQVL-PKYLSKFKDDKYADVGSLKEPDFDKVAELDPDLIIISARQSESYKEFSKIAPTIYLGVDTAKYMESFKSDAETIGKIFDKEDKVKDELANIDHSIADVKKTAEKLN---KNGLVIMANDGKISAFGPKSR--YGLIHDVFGVAPADQNIK--ASTHGQSVSYEYISKTNPDYLFVIDRGTAIGETSSTKQVVENDYVKNVNAVKNGHVIYLDSATWYLSGGGLESMTQMIKEVKDGLEKEN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -51920 for 2213 contacts (-23.5/contact) +
2D Compatibility (PS) -29174 + (NN) -15491 + (LL) 2560
1D Compatibility (HY) -15200 + (ID) 3650
Total energy: -112875.0 ( -51.01 by residue)
QMean score : 0.437
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