Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYQKQRNTAETQLNISIS-DDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQRVPSSKGVIE
4QNK Chain:D ((8-189))
-IGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQA-TESDPRR---------
General information:
TITO was launched using:
RESULT:
Template:
4QNK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139306 for 1525 contacts (-91.3/contact) +
2D Compatibility (PS) -19269 + (NN) -7696 + (LL) 772
1D Compatibility (HY) -12000 + (ID) 3850
Total energy: -181349.0 ( -118.92 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4QNK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QNK-query.scw
PDB file :
Tito_Scwrl_4QNK.pdb
: