Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIQIHHANAFEIIKDFHQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKLLEWIARYASLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNIHRRYVQDTEFALWAVKKKAKWVFNKPKNEKYLRPLILKSPVVSGIERVKHPTQKSLTLMEKIISTHTNPNDTVLDPFMGSGTTGLACKNL--KRNFIGIESEKEYFQIAQKRLS |
| 3TM4 Chain:A ((197-261)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------DHPAHLKASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 1288 for 396 contacts (3.3/contact) +
2D Compatibility (PS) -6783 + (NN) -4488 + (LL) 12464
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -1119.0 ( -2.83 by residue)
QMean score : 0.502
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