Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------MMTKNAYAFVVIE--KSIMVFKCAKDKGLIPITEGFV------PLKEGFLRSFKERCNLD--------FLENLDLLFLYDYQFPSEVFSLCKDL-KNSIWDRKLVVVLVEALEGFKGLN---------------LSLKIEDRHSNSLGNGVQKLLTNADLGSN------HKPIVIDSMKTYHQSQQEKYKRERGETLEVRPTTPPSYGGGSIRISG--DKKPDSNEENF------- |
| 4Q2E Chain:A ((29-290)) | ITASVVAPFVVLCFVSYESLIGLVSAILILAGYELITLEMKERDARFFYVILLALYPVLYGLVFEEPTQPLSILFITGVVFSLITDKDPSQVFKTVAAFSIALIYVTFFLSFFLPIYRDFGAANALLVLTSTWVFDSFAYFTGLKFGRTRISPRYSPRKSLEGVIGGFLGVVIYTFLYRLVVNDLLSVNVICFRTFLPFAATVAIMDTFGDIFECALKRHYGVKDSGKTLPGHGGMLDRIDGLLFVAPVSYIVFKILEGVVR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q2E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 47483 for 1448 contacts (32.8/contact) +
2D Compatibility (PS) -19876 + (NN) -11203 + (LL) 0
1D Compatibility (HY) -10800 + (ID) 1750
Total energy: 3854.0 ( 2.66 by residue)
QMean score : 0.089
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