Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTAKVNDIVRDWVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPK-TKLGKAMI-KKLKVYRDDKHPHTAQTSKKDAK
1LDD Chain:A ((778-814))
------------------------------------------------------------------------------------------------LQRSLPFIEGMLTNLGAMKLHKIHSFLKITVPKDWGY----------
General information:
TITO was launched using:
RESULT:
Template:
1LDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11111 for 170 contacts (-65.4/contact) +
2D Compatibility (PS) -3822 + (NN) -3556 + (LL) 7136
1D Compatibility (HY) -800 + (ID) 300
Total energy: -12453.0 ( -73.25 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_1LDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LDD-query.scw
PDB file :
Tito_Scwrl_1LDD.pdb
: