Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNAFLHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLENI-----DLNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQ-------ILNQKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
4MVA Chain:B ((82-270))
----------------------------------------------------HIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAG--KTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA
General information:
TITO was launched using:
RESULT:
Template:
4MVA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82601 for 1317 contacts (-62.7/contact) +
2D Compatibility (PS) -18760 + (NN) -6674 + (LL) 4508
1D Compatibility (HY) -10000 + (ID) 3400
Total energy: -116927.0 ( -88.78 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_4MVA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MVA-query.scw
PDB file :
Tito_Scwrl_4MVA.pdb
: