Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNANLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLEATQNAPFMATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRDFDAKRQTPLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKIVQSESMGIDTKEDLQNALKIFSPNLLKR
2Y6P Chain:C ((5-225))
-VIIPARLGSTRLKEKPLKNLLGKPLIRWVVEGLVKTGERVILATDSERVKEVVEDLCEVFLTPSDLPSGSDRVLYVVRDLDV---DLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARK-DKEAYERPEDVKVVLDREGYALYFSRSPIPYFRKNDTFYP---LKHVGIYGFR-KETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL-------
General information:
TITO was launched using:
RESULT:
Template:
2Y6P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99488 for 1761 contacts (-56.5/contact) +
2D Compatibility (PS) -23649 + (NN) -10581 + (LL) 940
1D Compatibility (HY) -13200 + (ID) 4250
Total energy: -150228.0 ( -85.31 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_2Y6P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y6P-query.scw
PDB file :
Tito_Scwrl_2Y6P.pdb
: