Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLEKQHIQYFKNLVGGEDFFTDLAHLNAYCYDATKERHLPSGVIFPKNEREISQILKYCNEHRLIVVPRGAGSGFTGGALSV-SGGLVLSVEKHLDKILEIDTKNLIARVEPGVINKHFQNEVEKLD--LFYPPDPASENQSTLGGNVAENAGGMRAAKYGITKDYVMALRVVLANGEIIRAGKKTIKDVAGFNIAGLMIASEG-CLGVISEITLKLLAKPPLKQSAMGVFNHIEDAMNAVYKTMSSGVTPVAMEFLDNLSIKAVEERFSKGLPKDAGAILITQVDGVVKEQIAWQLNEIEKHFKANGCVGFKIAQNEQEEQDLWFSRRNASQSISVYGKKKLNEDVTVPRASLPSLLQEVAKISQKYGFKIPCFGHTGDGNVHVNIMLEDPKRDLEKGHKAMEEIFQAAISLEGTLSGEHGIGLSKAKFMPLAFNHSEMELFRNIKKALDPNNILNPFKMGL |
| 3VTE Chain:A ((51-233)) | ------------------------------------TPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVD-LRNMHSI-KIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPG--GYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRK------SMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VTE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -88418 for 1432 contacts (-61.7/contact) +
2D Compatibility (PS) -19368 + (NN) -588 + (LL) 3196
1D Compatibility (HY) -5200 + (ID) 1700
Total energy: -112078.0 ( -78.27 by residue)
QMean score : 0.398
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