Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEP--FAVILADDLCISHEYPSVLKQMTSLYQKYQCSIVAIEEVVLEEVSKYGV--IRGEWLEERVYEIKDMVEKPSQEDAPSNLAVIGRYILTPDIFDILRETKPGKNNEIQITDA---LLTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKRL |
| 2PA4 Chain:D ((12-276)) | -VKTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER---DQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPT---GVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQ--GKRHDLGNPGGYIPACVDFGLSHP |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2PA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -171300 for 2114 contacts (-81.0/contact) +
2D Compatibility (PS) -27708 + (NN) -8676 + (LL) 548
1D Compatibility (HY) -15600 + (ID) 5250
Total energy: -227986.0 ( -107.85 by residue)
QMean score : 0.456
|
|
|