Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFKVPPKAKGFKRLFKALFYSKDGLKCAWAEESAFRQIVILALFCIVLASYLTKDFLEWGLLILPCFLSVVIELINSSIEKAVDFTGTEFHPLAKKAKDMASSAQLIGLIFWAFIWGRYLLTLYFN
4BPD Chain:D ((23-121))
-------------------AGYSWKGLRAAWINEAAFRQEGVAVLLCVVIAAWLDVDAVTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWAILLWSHFG-
General information:
TITO was launched using:
RESULT:
Template:
4BPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50475 for 593 contacts (-85.1/contact) +
2D Compatibility (PS) -10495 + (NN) -5229 + (LL) 952
1D Compatibility (HY) -9200 + (ID) 2100
Total energy: -76547.0 ( -129.08 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_4BPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BPD-query.scw
PDB file :
Tito_Scwrl_4BPD.pdb
: