Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQ-TGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDE------NRPARNEVFLALESLGFKSAEINPVLKTLKPH-LSIEAAIKEALQQLRS
1CUK Chain:A ((1-203))
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPTDDAEQEAVARLVALGYKPQEASRMVSKIARPDASSETLIREALRAAL-
General information:
TITO was launched using:
RESULT:
Template:
1CUK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133522 for 1350 contacts (-98.9/contact) +
2D Compatibility (PS) -19671 + (NN) -2507 + (LL) -28
1D Compatibility (HY) -11200 + (ID) 3400
Total energy: -170328.0 ( -126.17 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_1CUK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CUK-query.scw
PDB file :
Tito_Scwrl_1CUK.pdb
: