Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKRASFVE-VNTHSLRHNFNAVKNIVPKDACVMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDEALELRSHFSQTPILILGYSPNTNASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHLKIDTGMHRLGLE-PT-FKSIETIKKIRALKGLEVEGIFTHLSNADSNIKTHAKNQMKVFNAFLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKES-SQTILKNVISLKARIVQIKRVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRIQVAINNQLAPLIGKVCMDQCFVKLNDIEAKEGDEVILFGDKSTKANDASEIATLLNTIPYETISTLSKRLERVYV |
| 1BD0 Chain:A ((4-369)) | --FHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYS-GPFPIHFHLKMDTGMGRLGVKDEEETKRIVAL--IERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWL---PSRPPLVHCANSAASLRFP----DRTFNMVRFGIAMYGLAPSPGI-KPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQH-FHVLVDGQKAPIVGRICMDQCMIRLPGP-LPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTISYRVPRIFF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1BD0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -252392 for 3069 contacts (-82.2/contact) +
2D Compatibility (PS) -38184 + (NN) -2815 + (LL) 836
1D Compatibility (HY) -26000 + (ID) 6100
Total energy: -324655.0 ( -105.79 by residue)
QMean score : 0.575
|
|
|