Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPTIDFTFCEINPKKGFGGANGNKISLFYNNELYMVKFPPKPSTHKEMSYTNG----CFSEYVACHIVNSLGLK-VQETLLGTYKNKIVVACKDFTTHQYELVD--FLSLKNTMIELEK------SGKDTNLNDVLYAIDNQHFIEP---KVLKCFFWDMFVADT------LLGNFDRHNGNWGFLRASNSKEYQ------IAPIFD---CGSCLYPQADDVVCQKVLSNIDE----------LNARIYNFPQSI---LKDDNDKKINYYDFLTQTNNKDCLDALLRIYPRIDMNKIHSIIDNTPFMSEIHKEFLHTMLDERKSKIIDVAHTRAIELSLQHKQAHSNPYDNADDLDNSNEYTPTPKRRR--------------- |
| 1CJD Chain:A ((15-383)) | LRNQQAMAANLQARQIVLQQ-----SYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTD---INYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGN-------VGFVVNPKTVNQNARLLMGYEYFTSR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1CJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -26284 for 2197 contacts (-12.0/contact) +
2D Compatibility (PS) -31522 + (NN) 3401 + (LL) 112
1D Compatibility (HY) -4800 + (ID) 2550
Total energy: -61643.0 ( -28.06 by residue)
QMean score : 0.061
|
|
|