Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVIVLVVDSFKDTSNGTSMTAFRFFEALKKR-GHAMRVVAPHVDNLGSE-EEGYYNLK-ERYIPLVTEISHKQHILFAKPDEKILRKAF--KGADMIHTYLPFLLEKTAVKIAREMRVPYIGSFHLQPEHISYNMKLGQFSWLNTMLFSWFKSSHYR-YIHHIHCPSKFIVEELEKYNY-GGKKYAISNGFDPM-FKFEHPQ----K-S--------LFDTTPFKIAMVGRY--SNEKNQSVLIKAVALSRY-KQDIVLLLKGKGPDEKKIKLLAQK-L--GVKTEF-GFVNSHELLEILKTCTLYAHTANVESEAIACLEAISVGIVPVIANSPLSATRQFALDE-RSLFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNYTLENSVIQIEKVYEEAIKDFKNNPNLFKTLS |
| 1VGV Chain:A ((1-376)) | MKVLTVFGTRPE--A---IKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPG-QGLTE-ITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDL-------YS----PWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLN--PNVREPVNRILGHVKNVILIDPQEYLPFVWLM--NHAWLILTD---SGGIQEEAPSLGK-PVLVMRDTTERPEAVTAGTVRLVG-TDKQRIVEEVTRLLKDENEYQAMSRA----HNPYGDGQACSRILEALKNNRISL----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132404 for 2874 contacts (-46.1/contact) +
2D Compatibility (PS) -37787 + (NN) -12625 + (LL) 1728
1D Compatibility (HY) -400 + (ID) 1950
Total energy: -183438.0 ( -63.83 by residue)
QMean score : 0.437
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