Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTFLIALALTASLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNLKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
4YGF Chain:E ((9-234))
---------------------KWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNFKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
General information:
TITO was launched using:
RESULT:
Template:
4YGF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99162 for 1812 contacts (-54.7/contact) +
2D Compatibility (PS) -24521 + (NN) -14314 + (LL) 2136
1D Compatibility (HY) -27600 + (ID) 11250
Total energy: -174711.0 ( -96.42 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_4YGF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YGF-query.scw
PDB file :
Tito_Scwrl_4YGF.pdb
: