Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPLESRIKNEFLHLGLSGANVTLPFKERAFQICDKIKGIALECASVNTL-VLENDELVGYNTDALGFYLS-LKHQNYQNDQNALILGAGGSAKA-LACGLQKQGLKVSVLNRS-------ARGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKESKLAYDLAYG-FLTPFLSLAKELKIPFQ-DGKDMLIYQASLSFEKFSDSQIPYSKAFEVMRSVF |
| 3PGJ Chain:C ((29-277)) | --IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEA--AKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAF-EQLKQSYDVIINSTS-------PAIDPVI---FSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PGJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99568 for 1884 contacts (-52.8/contact) +
2D Compatibility (PS) -24006 + (NN) -6364 + (LL) 1304
1D Compatibility (HY) -11600 + (ID) 4100
Total energy: -144334.0 ( -76.61 by residue)
QMean score : 0.308
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