Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVVAKKSLGQHFLMDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRY-P-LKTYEIDSNLCEKMRARLRAEKKPFQLELVEKDALF-LKE--EEPYFLISNLPYYIATRLVLNALKDP-KCRGLLVMTQKEVALKFCAK-DSQNALSVLAHTIGNATLLFDVPPSAFSPPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNNLKKSVSYKEKLDKVLDFLALENQPTSVRASEVK--DYLKLLKSVLKG
3FTD Chain:A ((7-245))
------SFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIG-----DERLEVINEDASKFPFCSLGKELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQGKKDTG-WLSVFVRTFYDVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKFP----------------VKDLKNYKKFLTKIFQNRRKVLRKKIPE------------ELLKEAGINPDARVEQLSLEDFFKLYRLIEDS
General information:
TITO was launched using:
RESULT:
Template:
3FTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118349 for 1816 contacts (-65.2/contact) +
2D Compatibility (PS) -24960 + (NN) -16272 + (LL) 3988
1D Compatibility (HY) -18000 + (ID) 3400
Total energy: -176993.0 ( -97.46 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_3FTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FTD-query.scw
PDB file :
Tito_Scwrl_3FTD.pdb
: