Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLVGLGNPTLRYDHTRHNAGFDILDSLVSELDLSFIFSPKHNAYLCVYK----DFILLKPQTYMNLSGESVLSAKNFYKT--KELLIVHDDLDLPLGVVKFKKGGGNGGHNGLKSI-DALCSNSYYRLRVGISKGI---NITEHVLSKFHNNEEPLKNAAFEHAKNALKFFIESHDFNATQNRFTLKKPLQIES
3KK0 Chain:A ((6-186))
--LVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTTVVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVASALGTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLI-AQGLEPAQNTVHAW-------
General information:
TITO was launched using:
RESULT:
Template:
3KK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79512 for 1092 contacts (-72.8/contact) +
2D Compatibility (PS) -18650 + (NN) -4792 + (LL) 812
1D Compatibility (HY) -10000 + (ID) 3000
Total energy: -115142.0 ( -105.44 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_3KK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KK0-query.scw
PDB file :
Tito_Scwrl_3KK0.pdb
: