Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQNNKSNAAHAEG-GIPWKHIVGFALSVVLTLLAVWVALYSTLTTNVKVVIIFIFAFIQAALQLLMFMHMTEGRDGKIQIGNILFAAFIAIVVVIGSYWVMEIGHMNHLL
1SKN Chain:P ((15-88))
GRQSKDEQLASDNELPVSAFQISEMSLSELQQVLKN-----ESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44775 for 424 contacts (-105.6/contact) +
2D Compatibility (PS) -7938 + (NN) -6209 + (LL) 4248
1D Compatibility (HY) 1600 + (ID) 550
Total energy: -53624.0 ( -126.47 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_1SKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SKN-query.scw
PDB file :
Tito_Scwrl_1SKN.pdb
: