Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTIKITRKTGIGSGITP----------VKIRIENEEIVKLDNHQSHFFMPKMEKTKVCVTDWFYGSQEAVLENSNDVVV-RINRKALLLNYSMFP---FLFYGFVMTSLFATLIALGLCL---VSFFYS-RKHWFEFVKIK-----------------
2YZJ Chain:A ((12-169))
ILSHQSIKNLLGKVILNYSEENVRENGYDLRICGDKYYELVQGAELPEKKATLREIEFKERAILSANHTYLFESCEEFNMPADLAVLITLKSTLARNGFLAPPTVIDAGYKGKVNVAITAVYNSSLKKGMATHHLIFLKLDKPTERLYNGKYQGGILI
General information:
TITO was launched using:
RESULT:
Template:
2YZJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68432 for 806 contacts (-84.9/contact) +
2D Compatibility (PS) -13174 + (NN) 2898 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -81558.0 ( -101.19 by residue)
QMean score : 0.066
(partial model without unconserved sides chains):
PDB file :
Tito_2YZJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YZJ-query.scw
PDB file :
Tito_Scwrl_2YZJ.pdb
: