Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKSLSFMRVLEAVRTMLQEKGGLDISIVMRDQVEMPTTMIEMIDQEEEE-SQTAWKEKYRFAIHHYTNETDLAGVEKIDTLIQTGFTLPEGYKLIAVRHYGKQNLVKENTLIHAKTSFEVSICRELKVKI-
3DD7 Chain:A ((1-123))
MRHISPEELIALHDANISRYGGLP---GMSDPGRAEAIIGRVQARVAYEEITDLFEVSATYLVATARGYIFNDANKRTALNSALLFLRRNGVQV-----FDSPELADLTVGAATGEISVSSVADTLRRLYG
General information:
TITO was launched using:
RESULT:
Template:
3DD7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16615 for 958 contacts (-17.3/contact) +
2D Compatibility (PS) -12915 + (NN) -3343 + (LL) 1064
1D Compatibility (HY) 1600 + (ID) 600
Total energy: -30809.0 ( -32.16 by residue)
QMean score : 0.219
(partial model without unconserved sides chains):
PDB file :
Tito_3DD7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DD7-query.scw
PDB file :
Tito_Scwrl_3DD7.pdb
: