Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----LNIMIALIPALLWGTVPLIIT----KFGGSTRQQTMGMTL-------GALTFAVIVFFFTDPVYT--LKTVGISFIT-----GCLW-----TVGQMFQLQAFKIIGVSKAMPISTGMQLVGTTLCGVILFHEWDTTLRIILGFIA-----LALIVGGIFLTSYAEKEEDGTNALKQGL-ITLFISACGYVGLVVLIQGFKIDGINAILPQAIGMVISALIMTHSGGTEKRFNKRTLLLTIPGVIWAAGNVA------MVHANQLVGVATGFSLSQLGVVISTIGGIILLKEKKTQKEMLFVIVGVVLVVLGGILIGVAKGA |
| 4RKK Chain:A ((1-328)) | GSHMRFRFGVVVPPAVAGARPELLVVGSRPELGRWEPRGAVRLRPAGTAAGDGALALQEPGLWLGEVELAARVDTFWYKFLKREPGGELSWEGNGPHHDRCCTYNENNLVDGVYCLPIGHWIEATGHT-------NEMKHTTDFYFNIAGHQAMHYSRILPNIWLGSCPRQVEHVTIKLKHELGITAVMNFQTEWDIVQNSSGCNRYP-EPMTPDTMIKLYREEGLAYIWMPTPDMSTEGRVQMLPQAVCLLHALLEKGHIVYVHSNAGVGRSTAAVCGWLQYVMG-WNLRKVQYFLMAKRPAVYIDEEALARAQEDFFQKFGKVR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RKK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -264677 for 2176 contacts (-121.6/contact) +
2D Compatibility (PS) -28624 + (NN) 7397 + (LL) 1020
1D Compatibility (HY) -13200 + (ID) 2000
Total energy: -300084.0 ( -137.91 by residue)
QMean score : 0.133
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