Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLVNSVIVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGW------LDSYAGLIVPALFS-VFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGMKE
3FH6 Chain:G ((3-287))
-----MVQPKSQKARLFITHLLLLLFIAAIMFPLLMVVAISLRQ---------------------RITPPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLVN---------
General information:
TITO was launched using:
RESULT:
Template:
3FH6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188925 for 1633 contacts (-115.7/contact) +
2D Compatibility (PS) -25203 + (NN) -5360 + (LL) 2032
1D Compatibility (HY) -21200 + (ID) 3450
Total energy: -242106.0 ( -148.26 by residue)
QMean score : 0.145
(partial model without unconserved sides chains):
PDB file :
Tito_3FH6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FH6-query.scw
PDB file :
Tito_Scwrl_3FH6.pdb
: