Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MAKAKRTTKFVCQACGYESAKWMG------KCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTK--------LRAERLQVSGDNLYVYAETNLEAVQETIDFVKPD-----FVVIDSIQTVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYF-------EGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEV-FLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATG----IDYNKVSLIMAVLEKRVGLM------LQNQDAYLK-AAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWK-IPKDV----QVVGVETIGEALKKALPD |
| 3M6A Chain:A ((7-531)) | TGEVQTLTEKIEEAGMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGRIIQGMKKAGKLNPVFLLDEIDKMSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNL---QLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRI-TVTEKNLQDFIGKRIFRYGQAETEDQVGVVTGLAYTTVGGDTLSIEVSLSP---GKGKLILTGKLGDVMRESAQAAFSYVRSKTEELGIEPDFHEKYDIHIHVPEGAVPKDGPAAGITMATALVSALTGRAVSREVGMTGEITLRGRVLPIGGLKEKALGAHRAGLTTIIAPKDNEKDIEDIPESVREGLTFILASHLDEVLEHALV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M6A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123086 for 3406 contacts (-36.1/contact) +
2D Compatibility (PS) -47297 + (NN) -17784 + (LL) 508
1D Compatibility (HY) -8000 + (ID) 3350
Total energy: -199009.0 ( -58.43 by residue)
QMean score : 0.276
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