Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTNTLKTSYQKTPYKLGGNGPRNVGVLTEALQNIDDNLESDIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKE------NRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTAN-----------QLLTIDDIKSL-RE----PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFY--------QKSAEE----ICALFDSVYVSFYKGIGGIAGAILAGND--DFVQEAKIWKRRYGGD-LI-SLYPYI-LSADYYFEK-RIG-KMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSA-------DEIGAILTKIQDETGVGISGYLQEK-----------SADVCAFEVSVGD-AFAEIPAKNLELVFRCLEKEL |
1AX4 Chain:A ((70-437)) | ----------------------------------------EAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLK-YKQKEGKAKNPVFISNFHFDTTA---AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA-GIPIQ-YPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1AX4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196331 for 2660 contacts (-73.8/contact) +
2D Compatibility (PS) -33609 + (NN) -13253 + (LL) 1956
1D Compatibility (HY) -8400 + (ID) 2350
Total energy: -251987.0 ( -94.73 by residue)
QMean score : 0.482
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