Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VFIHGFQEE--VGNLWQETLRHPFVRSLADGTLEKEAFYYYLLQDDYYLSHFEKVIEKSVEQAGTAELAAEMREVQVRLQQSELLMREQFYP-RVGLTERD-FSERKPAPTAYHYTSHLHRMVDFGSFGVTIAALLPCYALYADIGKMYEGAR--SSEPFYQELLDSYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWRGSVNYV
3RM5 Chain:A ((331-549))
NFYEYLINHPKVKPHWDSYINHEFVKKVADGTLERKKFQFFIEQDYAYLVDYARVHCIAGSKAPCLEDMEKELVIV-GGVRTEMGQHEKRLKEVFGVKDPDYFQKIKRGPALRAYSRYFNDVSRRGNWQELVASLTPCLMGYGEALTKMKGKVTAPEGSVYHEWCETYASSWYREAMDEGEKLLNHILETYPPEQLDTLVTIYAEVCELETNFWTAALEY----------
General information:
TITO was launched using:
RESULT:
Template:
3RM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111514 for 1643 contacts (-67.9/contact) +
2D Compatibility (PS) -23040 + (NN) -9856 + (LL) 684
1D Compatibility (HY) -8800 + (ID) 2250
Total energy: -154776.0 ( -94.20 by residue)
QMean score : 0.750
(partial model without unconserved sides chains):
PDB file :
Tito_3RM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RM5-query.scw
PDB file :
Tito_Scwrl_3RM5.pdb
: