Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISIVLVSHSQKITEGLQEMIVEMV-GDTVHIISSGGTGDGRLGTNAIMIADNIAT----CT--NSEHIYIFCDIGSAILSAETALELLDTDLLEKTTIIDAPLVEGAFTAAVQSLVNPSKEAILQELTNVH
3GDW Chain:A ((4-121))
NVGVFVLMHGDSTASSMLKTAQELLGTS--IGTAMN----MPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSFGNMLFEET-G---IRTKAITMTSTMIVLEAIRMASVGRSLEDIYQNI----
General information:
TITO was launched using:
RESULT:
Template:
3GDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78622 for 877 contacts (-89.6/contact) +
2D Compatibility (PS) -12368 + (NN) -6485 + (LL) 284
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -99191.0 ( -113.10 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_3GDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GDW-query.scw
PDB file :
Tito_Scwrl_3GDW.pdb
: