Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDKKSENQTEKTETKENKGMTRREMLKLSAVAGTGIAVGATGLGTILNVVDQVDKALTPKEKAETGVPFYAS-NQAGIITAQQTYCYIASFDIQTE--SRQILQDLFVKWTKFADLTTSGGVLRDVDNDMLPPNDTGEADGLGISNFTVTLGYGPTFFEKDGKDRFGVKAKKPKYLEKIPHMAHDSLDEAYSDGDLCIQVCADDQQVAFHGIRNFIRLASGVAVVRWIEEGFLSAPKNETPRNLFGFKDGTANVDHDSNKGYKDVVWAEKDEPEWMRNGSYLGYRKIQMLIEIWDRSSLLDQEDTFGRKKASGAPYHKKHEHDKVDPSKLPADSHVRLAKDT-KQQMHRRAYSYTNGIDKSTGTIDAGLLFICFTQNPAKQFLPMLSIMGK------MDKLNEYTVPIGSAMFACQGGLAPGEIFGEKLL |
| 2GVK Chain:A ((10-312)) | ----------------------------------------------------------------------GGHIPQDV-AGKQGENVIFIVYNLTDSPDTVDKVKDVCANFSAMIRSMRNRF---------------------PDMQFSCTMGFGADAWTR-----LFPDKGKPKELSTFSEIKGEKYTAVSTPGDLLFHIRAKQMGLCFEFASILDEKLKGAVVSVDETHGFRYM----DGKAIIGFVDGTENPAVDE--NPYHFAVIGE-EDADFAGGSYVFVQKYIHDMVAWNALPVEQQEKVIGRHKFNDVELSD---------EEKPGNAHNAVTNIGDDLKIVRANMPFANTSK-----GEYGTYFIGYASTF-STTRRMLENMFIGSPAGNTDRLLDFSTAITGTLFFVPSYDLL--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95299 for 2441 contacts (-39.0/contact) +
2D Compatibility (PS) -31095 + (NN) -10538 + (LL) 5520
1D Compatibility (HY) -8400 + (ID) 2600
Total energy: -142412.0 ( -58.34 by residue)
QMean score : 0.356
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