Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQTIKANSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGI-MPNSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIRTVTIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVAYAIDQPEDVNVNEFTVGPTSQPW
3RKR Chain:B ((26-259))
-SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQH--QVRVSLVAPGSVR-----------------------AIEPDDIADVVALLATQADQSFISEVLVRPT----
General information:
TITO was launched using:
RESULT:
Template:
3RKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142788 for 1813 contacts (-78.8/contact) +
2D Compatibility (PS) -24204 + (NN) -13265 + (LL) 2088
1D Compatibility (HY) -12800 + (ID) 3850
Total energy: -194819.0 ( -107.46 by residue)
QMean score : 0.699
(partial model without unconserved sides chains):
PDB file :
Tito_3RKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RKR-query.scw
PDB file :
Tito_Scwrl_3RKR.pdb
: