Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHV-PNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLF--FPKSLNVFHWHQDTF-ALPTGSTRLFASEGCLNQAFLYG-ENIIGLQFHFEMEK-----AGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
2VPI Chain:A ((26-211))
GAVVILDAGA-QYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISG----------APWFDP------AIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARSG-NIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIA-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112940 for 1393 contacts (-81.1/contact) +
2D Compatibility (PS) -17950 + (NN) -1948 + (LL) 3896
1D Compatibility (HY) -8400 + (ID) 1850
Total energy: -139192.0 ( -99.92 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_2VPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VPI-query.scw
PDB file :
Tito_Scwrl_2VPI.pdb
: