Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVVADYLALFAVICIWGLLLINIVLIVAGYVYYLKNEARKVPEIPVEVPFVSVMVPAHNE-GKVIVKTVESLLAFDYPVDRYEIIVINDNSSDNSAELLAAIQAKNPTRFLKIINTDNITGGKGKSNALNIGFAESRGELVAIYDADNTPERQALRILVGEITNDAKLGAVIGKFRTRNRNASWLTRFINIETL-----SFQWMAQAGRWAL---------FKLCTIPGTNFIVRRSLLEEIGGWDVKAVA---EDTEISFRIYMMG--------YRIKFQAKAVTWEQEPQTLPVWFKQRSRWAKGNIYVILKNVP-LLFKREGRRVR-----FDILYFLSIYFLLLTSLIVSDVLLVLYALGLVHTTLAGLSGALWLLAILLFVAGTFITLTTEKGEISFSNLLFIML-----MYVTYC------QLWMVVAAYGFFI-------------------FLKDTVLKRETKWYKTERF |
1XHB Chain:A ((8-466)) | ---------------------------NRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQ---RSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPDSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNGPVTMLKCHHLKGNQLWEYDPVKLTLQHVNSNQCLDKATEEDSQVPSIRDCTGSRSQQWLLRNV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XHB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182041 for 3012 contacts (-60.4/contact) +
2D Compatibility (PS) -40631 + (NN) 3119 + (LL) 4000
1D Compatibility (HY) -2000 + (ID) 3550
Total energy: -221103.0 ( -73.41 by residue)
QMean score : 0.252
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