Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIIDYDTGNTKSISKALDFIGLQNKISSDATEISQADGVILPGVGAYPEAMKELTRRGLNKTLKEIAAGGKPILGVCLGMQLLLESSNEHSFTNGLGLIPGHVEKLPEDPEFAVPHMGWNQLQIKRATPLTKQLDGEYVYYVHSYYANCPEEYIIATSG-YSIEVPGMINKGNIYGAQFHPEKSGQIGLEILKGFKEVTYSCKSSQQ
1KA9 Chain:H ((4-195))
KALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRA---GRVPQMGWNALEFG---GAFAPLTGRHFYFANSYYGPL-TPYSLGKGEYEGTPFTALLAKENLLAPQFHPEKSGKAGLAFLALARR----------
General information:
TITO was launched using:
RESULT:
Template:
1KA9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104893 for 1600 contacts (-65.6/contact) +
2D Compatibility (PS) -20647 + (NN) -5863 + (LL) 656
1D Compatibility (HY) -13600 + (ID) 3250
Total energy: -147597.0 ( -92.25 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_1KA9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KA9-query.scw
PDB file :
Tito_Scwrl_1KA9.pdb
: