Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------VKGSFTKFKQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGI-SYYLFNPI-IDWLEKHKWKRGWAIALLYLVIIGLLILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSRSSLFDQLKDKLNTNMSDIMKTLSTKGTSVINSAISSIGSIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIV-PYLGPAIAITPAIIIAIVTS-----------PWLLIKLIIVWC----VVQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKRISGLYGEQPESEYVETPTEEKEL |
| 4WW4 Chain:A ((3-458)) | QISEVRGNTRDHRTAAHTHIKGLGLNSSGIAEKQAAGFVGQCAAREACGVVVDLIKAHKMAGRGVLLAGGPGTGKTALALAISQELGTKIPFCPITGSEIYSTEVKKTEVLMENFRRAIGLRVRETKDVYEGEVSTLLIGLKSARG------QKLDQKERVQVGDVIYIETNTGACRS----DAYATEFDLEAEEYVPIPKGEVHKKKEIVQDVTLHDLDVANARPDIISMMGQLMKPKMTEITDKLRMEINKVVQKYINQGV-------AELIPGVLFIDEAHMLDIECFTYLNKALESPIAPIVVLASNRGIATIRGADDLKAAHGIPPDFLQRLLIIPTHPYEPDEIRRIVRIRAQTEGVQLTDAAVDRVAEHGVRISLRYCLQLLAPASILARVNGRTQVDVQDIAEAEELFLDARRSANILTSTGGLH- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WW4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -346566 for 2609 contacts (-132.8/contact) +
2D Compatibility (PS) -38148 + (NN) 1166 + (LL) 1856
1D Compatibility (HY) 3600 + (ID) 2950
Total energy: -381042.0 ( -146.05 by residue)
QMean score : 0.148
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