Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTELEKMIAGEMYDPS-DRELAHGRNRARKFCREINDAMDSES--RASVLKRLFGGTKENVYVEPDFRVDYGSNIYVGENFYANFDCVILDVCEVHIGDNCMMAPGVHIYTATHPLDPVERNSGLELGKPVEIGDNVWIGGRAIINPGVKLGNNVVVASGAVVTKSFPDNVVVAGNPARVIKTIEVEEK
3V4E Chain:C ((5-188))
--TEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKID----
General information:
TITO was launched using:
RESULT:
Template:
3V4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141878 for 1437 contacts (-98.7/contact) +
2D Compatibility (PS) -19767 + (NN) -8749 + (LL) 736
1D Compatibility (HY) -14000 + (ID) 3650
Total energy: -187308.0 ( -130.35 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_3V4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V4E-query.scw
PDB file :
Tito_Scwrl_3V4E.pdb
: