Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKDNRKELIRAYKEKSPDAGV-Y------RFISTKSGKSLIDNTMDLKGIANKLAFGVKIGAGNMLPPEMAKEAKEHGIDTIQFEI---LEKVDIKPEMTKEDIKEENDVLLSLWLEREDI---
2O1A Chain:A ((17-138))
-QATSQPINFQVQKDGSSEKSHMDDYMQHPGKVIKQNNKYYFQTVL--NNASFWKEYKFYNANNQELATTVVNDNKKADTRTINVAVEPGYKSLTTKVHIVVPQINYNHRYTTHLEFEKAIPTLA
General information:
TITO was launched using:
RESULT:
Template:
2O1A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4581 for 711 contacts (-6.4/contact) +
2D Compatibility (PS) -11168 + (NN) 5677 + (LL) 308
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -11914.0 ( -16.76 by residue)
QMean score : 0.248
(partial model without unconserved sides chains):
PDB file :
Tito_2O1A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O1A-query.scw
PDB file :
Tito_Scwrl_2O1A.pdb
: