Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -------VSKNVKKIVITLFALIMTVGLASGFIAPIKASADTNNF----TVKVEYVDADGAEIAPSDILTDYHYVSTP---KDIPGYKLREIPH-NATGNITDTGIIVRYIYDKTIDVRYVDETGKDLLPVVEIINSEAAVLETISDYTFVKKDISIDGLHIIFRYKKNISTIPDFGKPNQVTVNYLDENKTPIAPSLYLSGLFNEAYNVPMKKIKGYTLLKYDSEILGVFTESPQTINIIYQKKAPEQAPSMEPLPDPTVPESPQVEKSKIKKSKIETTEKRTTSKVKIAPK-----------ALKLTKVEQKKQETKDSLPKTGDSSVNLLITCLGIIAI-SCGVYLLVQQSQKRRRKE |
4XNV Chain:A ((38-382)) | SFKCALTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSL-----------GRLKKKNAICISVLVWLIVVVAISP----ILFYSGTGVR------KNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1653 for 2195 contacts (-0.8/contact) +
2D Compatibility (PS) -31267 + (NN) -2284 + (LL) 464
1D Compatibility (HY) -14000 + (ID) 2400
Total energy: -51140.0 ( -23.30 by residue)
QMean score : 0.083
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