Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAG-LNPSGILIYPHEETLLLG-NINGDFRQ-LTFGKSE-AAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSEI--KGNEWILVKGSYGMGLKDVVENLIIK |
| 1GG4 Chain:A ((3-447)) | -SVTLSQLTDILNGELQG---ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLD---IDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLA--------SLAGVAKAKGEIFSGLP-ENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP---GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASG------VGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQ-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GG4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10175 for 3581 contacts (-2.8/contact) +
2D Compatibility (PS) -43718 + (NN) -59 + (LL) 408
1D Compatibility (HY) 14000 + (ID) 3400
Total energy: -42944.0 ( -11.99 by residue)
QMean score : 0.259
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