Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKLEFTTIDEYITQAPP-ETKEVLQKIRETIKAAAPEATEKISYQMPTFYLEG-NLVHFAVAKNHYGFYPASSGIAAFES-KL-GNYKHSKGAVQFPIKEEVPYELIKEMTLFRLAENKQKAAEKLAKKKKK
2I8D Chain:A ((3-117))
-------GSLAEWYQRIPTPDDLTRVESLFANMQAQFPQLKLEFKWNQPMFTDHGTFIMGFNPSKKHLAVAIEPQTMTRFIPQIDKAGYDH-SQIIRFPWHKPLDEQLIHDLIAYTIDQKKDA-----------
General information:
TITO was launched using:
RESULT:
Template:
2I8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26841 for 561 contacts (-47.8/contact) +
2D Compatibility (PS) -12275 + (NN) -4753 + (LL) 1596
1D Compatibility (HY) -6800 + (ID) 900
Total energy: -49973.0 ( -89.08 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_2I8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2I8D-query.scw
PDB file :
Tito_Scwrl_2I8D.pdb
: