Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG--LHITGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG-KFPLPLEVIPFGWKQVERKLEKEHIQTNLRK--QSSGEVYVTNNGNYILDIVNQTFTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANGEIELIKK
1LK5 Chain:B ((7-223))
----KKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQKMPVPIEVIPQAWKAIIEELSIFNAKAELRMGVNKDGPV-ITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREG-------
General information:
TITO was launched using:
RESULT:
Template:
1LK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90358 for 1835 contacts (-49.2/contact) +
2D Compatibility (PS) -23367 + (NN) -8510 + (LL) 1464
1D Compatibility (HY) -18800 + (ID) 4400
Total energy: -143971.0 ( -78.46 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1LK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LK5-query.scw
PDB file :
Tito_Scwrl_1LK5.pdb
: